updated Ganymede and python images
This commit is contained in:
@@ -7,23 +7,16 @@ RUN adduser jovyan -u 1000 --system -s /bin/sh -h /home/jovyan
|
||||
USER jovyan
|
||||
WORKDIR /home/jovyan
|
||||
RUN python -m venv venv
|
||||
RUN venv/bin/pip install numpy
|
||||
RUN venv/bin/pip install matplotlib
|
||||
RUN venv/bin/pip install jupyter-core
|
||||
RUN venv/bin/pip install jupyterhub
|
||||
RUN venv/bin/pip install jupyterlab
|
||||
RUN venv/bin/pip install notebook
|
||||
RUN venv/bin/pip install ipywidgets
|
||||
RUN venv/bin/pip install jupyterlab-lsp
|
||||
RUN venv/bin/pip install python-lsp-server[yapf,rope,pyflakes]
|
||||
RUN venv/bin/pip install pylsp-mypy
|
||||
RUN venv/bin/pip install notebook==5.7.16
|
||||
ENV PATH="/home/jovyan/venv/bin/:$PATH"
|
||||
RUN java -jar /ganymede-2.1.2.20230910.jar -i --copy-jar=true
|
||||
RUN venv/bin/pip install jupyterhub
|
||||
|
||||
FROM alpine:3.19
|
||||
RUN --mount=type=cache,target=/var/cache/apk/,sharing=locked \
|
||||
apk update &&\
|
||||
apk add python3 openjdk21-jre texlive texlive-xetex texlive-full
|
||||
apk add python3 openjdk21-jre
|
||||
RUN adduser jovyan -u 1000 --system -s /bin/sh -h /home/jovyan
|
||||
USER jovyan
|
||||
COPY --from=build /home/jovyan /home/jovyan
|
||||
|
||||
@@ -1,31 +1,43 @@
|
||||
FROM alpine:3.19 AS build
|
||||
RUN --mount=type=cache,target=/var/cache/apk/,sharing=locked \
|
||||
apk update &&\
|
||||
apk add python3 python3-dev pipx gcc musl-dev linux-headers
|
||||
RUN adduser luser --system -s /bin/sh -h /var/lib/jupyter
|
||||
USER luser
|
||||
WORKDIR /var/lib/jupyter
|
||||
RUN pipx install jupyter-core
|
||||
RUN pipx inject jupyter-core jupyterlab
|
||||
RUN pipx inject jupyter-core ipywidgets
|
||||
RUN pipx inject jupyter-core jupyterlab-lsp
|
||||
RUN pipx inject jupyter-core python-lsp-server[yapf,rope,pyflakes]
|
||||
RUN pipx inject jupyter-core pylsp-mypy
|
||||
RUN pipx inject jupyter-core matplotlib
|
||||
RUN pipx inject jupyter-core numpy
|
||||
|
||||
apk add python3 python3-dev pipx gcc g++ musl-dev linux-headers libffi-dev
|
||||
RUN adduser jovyan -u 1000 --system -s /bin/sh -h /home/jovyan
|
||||
USER jovyan
|
||||
WORKDIR /home/jovyan
|
||||
RUN python -m venv venv
|
||||
RUN venv/bin/pip install numpy
|
||||
RUN venv/bin/pip install matplotlib
|
||||
RUN venv/bin/pip install jupyter-core
|
||||
RUN venv/bin/pip install jupyterhub
|
||||
RUN venv/bin/pip install jupyterlab
|
||||
RUN venv/bin/pip install notebook
|
||||
RUN venv/bin/pip install ipywidgets
|
||||
RUN venv/bin/pip install jupyterlab-lsp
|
||||
RUN venv/bin/pip install python-lsp-server[yapf,rope,pyflakes]
|
||||
RUN venv/bin/pip install pylsp-mypy
|
||||
RUN venv/bin/pip install solders
|
||||
RUN venv/bin/pip install solana
|
||||
ENV PATH="/home/jovyan/venv/bin/:$PATH"
|
||||
|
||||
FROM alpine:3.19
|
||||
RUN --mount=type=cache,target=/var/cache/apk/,sharing=locked \
|
||||
apk update &&\
|
||||
apk add python3 texlive texlive-xetex texlive-full
|
||||
|
||||
RUN adduser luser --system -s /bin/sh -h /var/lib/jupyter
|
||||
USER luser
|
||||
WORKDIR /var/lib/jupyter
|
||||
COPY --from=build /var/lib/jupyter /var/lib/jupyter
|
||||
ENV PATH="/var/lib/jupyter/.local/bin/:$PATH"
|
||||
ENTRYPOINT ["jupyter", "lab", "--no-browser", "--ip=0.0.0.0"]
|
||||
EXPOSE 8888/tcp
|
||||
|
||||
apk add python3
|
||||
RUN adduser jovyan -u 1000 --system -s /bin/sh -h /home/jovyan
|
||||
USER jovyan
|
||||
COPY --from=build /home/jovyan /home/jovyan
|
||||
COPY jupyter_server_config.py docker_healthcheck.py /etc/jupyter/
|
||||
COPY start-notebook.py start-singleuser.py /usr/local/bin/
|
||||
RUN mkdir /home/jovyan/work
|
||||
WORKDIR /home/jovyan/work
|
||||
ENV JUPYTER_PORT=8888
|
||||
EXPOSE $JUPYTER_PORT
|
||||
ENV PATH="/home/jovyan/venv/bin/:$PATH"
|
||||
CMD ["start-notebook.py"]
|
||||
|
||||
# HEALTHCHECK documentation: https://docs.docker.com/engine/reference/builder/#healthcheck
|
||||
# This healtcheck works well for `lab`, `notebook`, `nbclassic`, `server`, and `retro` jupyter commands
|
||||
# https://github.com/jupyter/docker-stacks/issues/915#issuecomment-1068528799
|
||||
HEALTHCHECK --interval=3s --timeout=1s --start-period=3s --retries=3 \
|
||||
CMD /etc/jupyter/docker_healthcheck.py || exit 1
|
||||
|
||||
39
jupyter-python/docker_healthcheck.py
Executable file
39
jupyter-python/docker_healthcheck.py
Executable file
@@ -0,0 +1,39 @@
|
||||
#!/usr/bin/env python3
|
||||
# Copyright (c) Jupyter Development Team.
|
||||
# Distributed under the terms of the Modified BSD License.
|
||||
import json
|
||||
import os
|
||||
import subprocess
|
||||
from pathlib import Path
|
||||
|
||||
import requests
|
||||
|
||||
# Several operations below deliberately don't check for possible errors
|
||||
# As this is a health check, it should succeed or raise an exception on error
|
||||
|
||||
# Docker runs health checks using an exec
|
||||
# It uses the default user configured when running the image: root for the case of a custom NB_USER or jovyan for the case of the default image user.
|
||||
# We manually change HOME to make `jupyter --runtime-dir` report a correct path
|
||||
# More information: <https://github.com/jupyter/docker-stacks/pull/2074#issuecomment-1879778409>
|
||||
result = subprocess.run(
|
||||
["jupyter", "--runtime-dir"],
|
||||
check=True,
|
||||
capture_output=True,
|
||||
text=True,
|
||||
env=dict(os.environ) | {"HOME": "/home/" + os.environ["NB_USER"]},
|
||||
)
|
||||
runtime_dir = Path(result.stdout.rstrip())
|
||||
|
||||
json_file = next(runtime_dir.glob("*server-*.json"))
|
||||
|
||||
url = json.loads(json_file.read_bytes())["url"]
|
||||
url = url + "api"
|
||||
|
||||
proxies = {
|
||||
"http": "",
|
||||
"https": "",
|
||||
}
|
||||
|
||||
r = requests.get(url, proxies=proxies, verify=False) # request without SSL verification
|
||||
r.raise_for_status()
|
||||
print(r.content)
|
||||
58
jupyter-python/jupyter_server_config.py
Normal file
58
jupyter-python/jupyter_server_config.py
Normal file
@@ -0,0 +1,58 @@
|
||||
# Copyright (c) Jupyter Development Team.
|
||||
# Distributed under the terms of the Modified BSD License.
|
||||
# mypy: ignore-errors
|
||||
import os
|
||||
import stat
|
||||
import subprocess
|
||||
from pathlib import Path
|
||||
|
||||
from jupyter_core.paths import jupyter_data_dir
|
||||
|
||||
c = get_config() # noqa: F821
|
||||
c.ServerApp.ip = "0.0.0.0"
|
||||
c.ServerApp.open_browser = False
|
||||
|
||||
# to output both image/svg+xml and application/pdf plot formats in the notebook file
|
||||
c.InlineBackend.figure_formats = {"png", "jpeg", "svg", "pdf"}
|
||||
|
||||
# https://github.com/jupyter/notebook/issues/3130
|
||||
c.FileContentsManager.delete_to_trash = False
|
||||
|
||||
# Generate a self-signed certificate
|
||||
OPENSSL_CONFIG = """\
|
||||
[req]
|
||||
distinguished_name = req_distinguished_name
|
||||
[req_distinguished_name]
|
||||
"""
|
||||
if "GEN_CERT" in os.environ:
|
||||
dir_name = Path(jupyter_data_dir())
|
||||
dir_name.mkdir(parents=True, exist_ok=True)
|
||||
pem_file = dir_name / "notebook.pem"
|
||||
|
||||
# Generate an openssl.cnf file to set the distinguished name
|
||||
cnf_file = Path(os.getenv("CONDA_DIR", "/usr/lib")) / "ssl/openssl.cnf"
|
||||
if not cnf_file.exists():
|
||||
cnf_file.write_text(OPENSSL_CONFIG)
|
||||
|
||||
# Generate a certificate if one doesn't exist on a disk
|
||||
subprocess.check_call(
|
||||
[
|
||||
"openssl",
|
||||
"req",
|
||||
"-new",
|
||||
"-newkey=rsa:2048",
|
||||
"-days=365",
|
||||
"-nodes",
|
||||
"-x509",
|
||||
"-subj=/C=XX/ST=XX/L=XX/O=generated/CN=generated",
|
||||
f"-keyout={pem_file}",
|
||||
f"-out={pem_file}",
|
||||
]
|
||||
)
|
||||
# Restrict access to the file
|
||||
pem_file.chmod(stat.S_IRUSR | stat.S_IWUSR)
|
||||
c.ServerApp.certfile = str(pem_file)
|
||||
|
||||
# Change default umask for all subprocesses of the Server if set in the environment
|
||||
if "NB_UMASK" in os.environ:
|
||||
os.umask(int(os.environ["NB_UMASK"], 8))
|
||||
44
jupyter-python/start-notebook.py
Executable file
44
jupyter-python/start-notebook.py
Executable file
@@ -0,0 +1,44 @@
|
||||
#!/usr/bin/env python
|
||||
# Copyright (c) Jupyter Development Team.
|
||||
# Distributed under the terms of the Modified BSD License.
|
||||
import os
|
||||
import shlex
|
||||
import sys
|
||||
|
||||
# If we are in a JupyterHub, we pass on to `start-singleuser.py` instead so it does the right thing
|
||||
if "JUPYTERHUB_API_TOKEN" in os.environ:
|
||||
print(
|
||||
"WARNING: using start-singleuser.py instead of start-notebook.py to start a server associated with JupyterHub."
|
||||
)
|
||||
command = ["/usr/local/bin/start-singleuser.py"] + sys.argv[1:]
|
||||
os.execvp(command[0], command)
|
||||
|
||||
|
||||
# Entrypoint is start.sh
|
||||
command = []
|
||||
|
||||
# If we want to survive restarts, launch the command using `run-one-constantly`
|
||||
if os.environ.get("RESTARTABLE") == "yes":
|
||||
command.append("run-one-constantly")
|
||||
|
||||
# We always launch a jupyter subcommand from this script
|
||||
command.append("jupyter")
|
||||
|
||||
# Launch the configured subcommand.
|
||||
# Note that this should be a single string, so we don't split it.
|
||||
# We default to `lab`.
|
||||
jupyter_command = os.environ.get("DOCKER_STACKS_JUPYTER_CMD", "lab")
|
||||
command.append(jupyter_command)
|
||||
|
||||
# Append any optional NOTEBOOK_ARGS we were passed in.
|
||||
# This is supposed to be multiple args passed on to the notebook command,
|
||||
# so we split it correctly with shlex
|
||||
if "NOTEBOOK_ARGS" in os.environ:
|
||||
command += shlex.split(os.environ["NOTEBOOK_ARGS"])
|
||||
|
||||
# Pass through any other args we were passed on the command line
|
||||
command += sys.argv[1:]
|
||||
|
||||
# Execute the command!
|
||||
print("Executing: " + " ".join(command))
|
||||
os.execvp(command[0], command)
|
||||
26
jupyter-python/start-singleuser.py
Executable file
26
jupyter-python/start-singleuser.py
Executable file
@@ -0,0 +1,26 @@
|
||||
#!/usr/bin/env python
|
||||
# Copyright (c) Jupyter Development Team.
|
||||
# Distributed under the terms of the Modified BSD License.
|
||||
import os
|
||||
import shlex
|
||||
import sys
|
||||
|
||||
# Entrypoint is start.sh
|
||||
command = ["jupyterhub-singleuser"]
|
||||
|
||||
# set default ip to 0.0.0.0
|
||||
if "--ip=" not in os.environ.get("NOTEBOOK_ARGS", ""):
|
||||
command.append("--ip=0.0.0.0")
|
||||
|
||||
# Append any optional NOTEBOOK_ARGS we were passed in.
|
||||
# This is supposed to be multiple args passed on to the notebook command,
|
||||
# so we split it correctly with shlex
|
||||
if "NOTEBOOK_ARGS" in os.environ:
|
||||
command += shlex.split(os.environ["NOTEBOOK_ARGS"])
|
||||
|
||||
# Pass any other args we have been passed through
|
||||
command += sys.argv[1:]
|
||||
|
||||
# Execute the command!
|
||||
print("Executing: " + " ".join(command))
|
||||
os.execvp(command[0], command)
|
||||
Reference in New Issue
Block a user