make sure includeLibraries only includes jar files

.gitea/workflows/build.yaml

@@ -0,0 +1,21 @@
+name: CI
+on:
+  push:
+    branches: [ master ]
+jobs:
+  build:
+    runs-on: hostinger
+    steps:
+      - name: Checkout sources
+        uses: actions/checkout@v4
+      - name: Setup Java
+        uses: actions/setup-java@v4
+        with:
+          distribution: graalvm
+          java-version: 21
+      - name: Setup Gradle
+        uses: gradle/actions/setup-gradle@v3
+      - name: Execute Gradle build
+        env:
+          PUBLISHER_TOKEN: ${{ secrets.PUBLISHER_TOKEN }}
+        run: ./gradlew publish

README.md

@@ -15,12 +15,12 @@ Declare the plugin in your build's `settings.gradle` like this
 pluginManagement {
     repositories {
         maven {
-            url = 'https://woggioni.net/mvn/'
+            url = 'https://gitea.woggioni.net/api/packages/woggioni/maven'
         }
     }
 
     plugins {
-        id "net.woggioni.gradle.envelope" version "2023.09.25"
+        id "net.woggioni.gradle.envelope" version "2025.01.21"
     }
 }
 ```
@@ -80,10 +80,12 @@ ${sys:user.home}/plugins
 ```
 
 ###### javaAgent
-This is a method accepting 2 strings, the first is the Java agent classname and the second one is the java agent arguments.
+This is a method accepting 2 strings, the first is the Java agent class name and the second one is the java agent arguments.
 It can be invoked multiple times to setup multiple java agents for the same JAR file. 
 All the java agents will be invoked before the application startup.
 
+Java agents configured in this way will always run together with the application and cannot be disabled.
+
 ### Example
 
 ```groovy
@@ -107,7 +109,14 @@ envelopeJar {
 
 ### Limitations
 
-This plugin requires Gradle >= 6.0 and Java >=0 8 to build the executable jar file.
+- This plugin requires Gradle >= 6.0 and Java >=0 8 to build the executable jar file.
 The assembled envelope jar requires and Java >= 8 to run, if only `mainClass` is specified,
 if both `mainModule` and `mainClass` are specified the generated jar file will (try to) run in classpath mode on Java 8
-and in JPMS mode on Java > 8.
+and in JPMS mode on Java > 8.
+
+- When running in JPMS mode (when the `mainModule` property is set), command line arguments like
+`--add-opens`, `--add-exports`, `--add-reads` won't work as JPMS is initialized after application startup
+
+- When running in JPMS mode custom stream handler need to added installed using `URL.setURLStreamHandlerFactory`,
+  setting the `java.protocol.handler.pkgs` system property does not work as it tries to load
+  the respective handler using the system classloader which, in an envelope application, can only load envelope own classes

build.gradle

@@ -16,7 +16,7 @@ allprojects {
 
     java {
         toolchain {
-            languageVersion = JavaLanguageVersion.of(17)
+            languageVersion = JavaLanguageVersion.of(21)
         }
     }
 
@@ -45,7 +45,18 @@ allprojects {
         publishing {
             repositories {
                 maven {
-                    url = publishMavenRepositoryUrl
+                    name = "Gitea"
+                    url = uri(getProperty('gitea.maven.url'))
+
+                    credentials(HttpHeaderCredentials) {
+                        name = "Authorization"
+                        value = "token ${System.getenv()["PUBLISHER_TOKEN"]}"
+                    }
+
+                    authentication {
+                        header(HttpHeaderAuthentication)
+                    }
+
                 }
             }
         }
@@ -104,11 +115,6 @@ gradlePlugin {
     }
 }
 
-wrapper {
-    gradleVersion = getProperty('version.gradle')
-    distributionType = Wrapper.DistributionType.ALL
-}
-
 tasks.named('processTestResources') { ProcessResources it ->
     doLast {
         Files.newBufferedWriter(it.destinationDir.toPath().resolve('test-resources.txt')).withCloseable { writer ->

gradle.properties

@@ -1,7 +1,7 @@
-woggioniMavenRepositoryUrl=https://woggioni.net/mvn/
-publishMavenRepositoryUrl=https://mvn.woggioni.net/
+gitea.maven.url = https://gitea.woggioni.net/api/packages/woggioni/maven
 
-lys.version = 2024.02.24
+lys.version = 2025.03.08
 
-version.envelope=2024.02.28
-version.gradle=7.6
+version.envelope=2025.03.12
+
+org.gradle.caching=true

gradle/wrapper/gradle-wrapper.properties

@@ -1,6 +1,7 @@
 distributionBase=GRADLE_USER_HOME
 distributionPath=wrapper/dists
-distributionUrl=https\://services.gradle.org/distributions/gradle-8.3-bin.zip
+distributionUrl=https\://services.gradle.org/distributions/gradle-8.13-all.zip
 networkTimeout=10000
+validateDistributionUrl=true
 zipStoreBase=GRADLE_USER_HOME
 zipStorePath=wrapper/dists

gradlew

@@ -15,6 +15,8 @@
 # See the License for the specific language governing permissions and
 # limitations under the License.
 #
+# SPDX-License-Identifier: Apache-2.0
+#
 
 ##############################################################################
 #
@@ -55,7 +57,7 @@
 #       Darwin, MinGW, and NonStop.
 #
 #   (3) This script is generated from the Groovy template
-#       https://github.com/gradle/gradle/blob/HEAD/subprojects/plugins/src/main/resources/org/gradle/api/internal/plugins/unixStartScript.txt
+#       https://github.com/gradle/gradle/blob/HEAD/platforms/jvm/plugins-application/src/main/resources/org/gradle/api/internal/plugins/unixStartScript.txt
 #       within the Gradle project.
 #
 #       You can find Gradle at https://github.com/gradle/gradle/.
@@ -83,10 +85,9 @@ done
 # This is normally unused
 # shellcheck disable=SC2034
 APP_BASE_NAME=${0##*/}
-APP_HOME=$( cd "${APP_HOME:-./}" && pwd -P ) || exit
-
-# Add default JVM options here. You can also use JAVA_OPTS and GRADLE_OPTS to pass JVM options to this script.
-DEFAULT_JVM_OPTS='"-Xmx64m" "-Xms64m"'
+# Discard cd standard output in case $CDPATH is set (https://github.com/gradle/gradle/issues/25036)
+APP_HOME=$( cd -P "${APP_HOME:-./}" > /dev/null && printf '%s
+' "$PWD" ) || exit
 
 # Use the maximum available, or set MAX_FD != -1 to use that value.
 MAX_FD=maximum
@@ -133,10 +134,13 @@ location of your Java installation."
     fi
 else
     JAVACMD=java
-    which java >/dev/null 2>&1 || die "ERROR: JAVA_HOME is not set and no 'java' command could be found in your PATH.
+    if ! command -v java >/dev/null 2>&1
+    then
+        die "ERROR: JAVA_HOME is not set and no 'java' command could be found in your PATH.
 
 Please set the JAVA_HOME variable in your environment to match the
 location of your Java installation."
+    fi
 fi
 
 # Increase the maximum file descriptors if we can.
@@ -144,7 +148,7 @@ if ! "$cygwin" && ! "$darwin" && ! "$nonstop" ; then
     case $MAX_FD in #(
       max*)
         # In POSIX sh, ulimit -H is undefined. That's why the result is checked to see if it worked.
-        # shellcheck disable=SC3045 
+        # shellcheck disable=SC2039,SC3045
         MAX_FD=$( ulimit -H -n ) ||
             warn "Could not query maximum file descriptor limit"
     esac
@@ -152,7 +156,7 @@ if ! "$cygwin" && ! "$darwin" && ! "$nonstop" ; then
       '' | soft) :;; #(
       *)
         # In POSIX sh, ulimit -n is undefined. That's why the result is checked to see if it worked.
-        # shellcheck disable=SC3045 
+        # shellcheck disable=SC2039,SC3045
         ulimit -n "$MAX_FD" ||
             warn "Could not set maximum file descriptor limit to $MAX_FD"
     esac
@@ -197,11 +201,15 @@ if "$cygwin" || "$msys" ; then
     done
 fi
 
-# Collect all arguments for the java command;
-#   * $DEFAULT_JVM_OPTS, $JAVA_OPTS, and $GRADLE_OPTS can contain fragments of
-#     shell script including quotes and variable substitutions, so put them in
-#     double quotes to make sure that they get re-expanded; and
-#   * put everything else in single quotes, so that it's not re-expanded.
+
+# Add default JVM options here. You can also use JAVA_OPTS and GRADLE_OPTS to pass JVM options to this script.
+DEFAULT_JVM_OPTS='"-Xmx64m" "-Xms64m"'
+
+# Collect all arguments for the java command:
+#   * DEFAULT_JVM_OPTS, JAVA_OPTS, JAVA_OPTS, and optsEnvironmentVar are not allowed to contain shell fragments,
+#     and any embedded shellness will be escaped.
+#   * For example: A user cannot expect ${Hostname} to be expanded, as it is an environment variable and will be
+#     treated as '${Hostname}' itself on the command line.
 
 set -- \
         "-Dorg.gradle.appname=$APP_BASE_NAME" \

gradlew.bat

@@ -13,6 +13,8 @@
 @rem See the License for the specific language governing permissions and
 @rem limitations under the License.
 @rem
+@rem SPDX-License-Identifier: Apache-2.0
+@rem
 
 @if "%DEBUG%"=="" @echo off
 @rem ##########################################################################
@@ -43,11 +45,11 @@ set JAVA_EXE=java.exe
 %JAVA_EXE% -version >NUL 2>&1
 if %ERRORLEVEL% equ 0 goto execute
 
-echo.
-echo ERROR: JAVA_HOME is not set and no 'java' command could be found in your PATH.
-echo.
-echo Please set the JAVA_HOME variable in your environment to match the
-echo location of your Java installation.
+echo. 1>&2
+echo ERROR: JAVA_HOME is not set and no 'java' command could be found in your PATH. 1>&2
+echo. 1>&2
+echo Please set the JAVA_HOME variable in your environment to match the 1>&2
+echo location of your Java installation. 1>&2
 
 goto fail
 
@@ -57,11 +59,11 @@ set JAVA_EXE=%JAVA_HOME%/bin/java.exe
 
 if exist "%JAVA_EXE%" goto execute
 
-echo.
-echo ERROR: JAVA_HOME is set to an invalid directory: %JAVA_HOME%
-echo.
-echo Please set the JAVA_HOME variable in your environment to match the
-echo location of your Java installation.
+echo. 1>&2
+echo ERROR: JAVA_HOME is set to an invalid directory: %JAVA_HOME% 1>&2
+echo. 1>&2
+echo Please set the JAVA_HOME variable in your environment to match the 1>&2
+echo location of your Java installation. 1>&2
 
 goto fail
 

loader/src/main/java11/net.woggioni.envelope.loader/JarFileModuleFinder.java

@@ -192,7 +192,7 @@ public class JarFileModuleFinder implements ModuleFinder {
     private static Set<String> collectPackageNames(JarFile jarFile) {
         Set<String> result = jarFile
             .versionedStream()
-            .filter(entry -> entry.getName().endsWith(".class"))
+            .filter(zipEntry -> !zipEntry.isDirectory())
             .map(entry -> {
                 String entryName = entry.getName();
                 int lastSlash = entryName.lastIndexOf('/');
@@ -459,7 +459,8 @@ public class JarFileModuleFinder implements ModuleFinder {
 
     /**
      * Returns {@code true} if the given name is a legal type name.
-     */    private static boolean isPackageName(String name) {
+     */
+    private static boolean isPackageName(String name) {
         return isTypeName(name);
     }
 

settings.gradle

@@ -9,7 +9,7 @@ pluginManagement {
                 includeModule 'net.woggioni.gradle', 'multi-release-jar'
                 includeModule 'net.woggioni.gradle.multi-release-jar', 'net.woggioni.gradle.multi-release-jar.gradle.plugin'
             }
-            url = 'https://woggioni.net/mvn/'
+            url = getProperty('gitea.maven.url')
         }
     }
 }
@@ -17,7 +17,7 @@ pluginManagement {
 dependencyResolutionManagement {
     repositories {
         maven {
-            url = 'https://woggioni.net/mvn/'
+            url = getProperty('gitea.maven.url')
             content {
                 includeGroup 'com.lys'
             }

src/main/java/net/woggioni/gradle/envelope/EnvelopeJarTask.java

@@ -135,7 +135,10 @@ public abstract class EnvelopeJarTask extends AbstractArchiveTask {
     }
 
     public void includeLibraries(Object... files) {
-        into(Constants.LIBRARIES_FOLDER, (copySpec) -> copySpec.from(files));
+        into(Constants.LIBRARIES_FOLDER, (copySpec) -> {
+            copySpec.include("*.jar");
+            copySpec.from(files);
+        });
     }
 
 

src/main/java/net/woggioni/gradle/envelope/EnvelopePlugin.java

@@ -12,11 +12,13 @@ import org.gradle.api.tasks.bundling.Jar;
 public class EnvelopePlugin implements Plugin<Project> {
 
     public static final String ENVELOPE_GROUP_NAME = "envelope";
+    public static final String ENVELOPE_JAR_TASK_NAME = "envelopeJar";
+    public static final String ENVELOPE_RUN_TASK_NAME = "envelopeRun";
 
     @Override
     public void apply(Project project) {
         project.getPluginManager().apply(JavaPlugin.class);
-        Provider<EnvelopeJarTask> envelopeJarTaskProvider = project.getTasks().register("envelopeJar", EnvelopeJarTask.class, t -> {
+        Provider<EnvelopeJarTask> envelopeJarTaskProvider = project.getTasks().register(ENVELOPE_JAR_TASK_NAME, EnvelopeJarTask.class, t -> {
             t.setGroup(ENVELOPE_GROUP_NAME);
             t.setDescription("Package the application in a single executable jar file");
             t.includeLibraries(project.getConfigurations().named(JavaPlugin.RUNTIME_CLASSPATH_CONFIGURATION_NAME));
@@ -25,7 +27,7 @@ public class EnvelopePlugin implements Plugin<Project> {
         project.getTasks().named(BasePlugin.ASSEMBLE_TASK_NAME, DefaultTask.class, assembleTask -> {
             assembleTask.dependsOn(envelopeJarTaskProvider);
         });
-        Provider<JavaExec> envelopeRunTaskProvider = project.getTasks().register("envelopeRun", JavaExec.class, t -> {
+        Provider<JavaExec> envelopeRunTaskProvider = project.getTasks().register(ENVELOPE_RUN_TASK_NAME, JavaExec.class, t -> {
             t.getInputs().files(envelopeJarTaskProvider);
             t.setGroup(ENVELOPE_GROUP_NAME);
             t.setDescription("Run the application in the envelope jar");